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      At UN climate change conference, trying to “keep 1.5 alive”

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      After a one-year delay caused by the Covid-19 pandemic, negotiators from nearly 200 countries met this month in Glasgow, Scotland, at COP26, the United Nations climate change conference, to hammer out a new global agreement to reduce greenhouse gas emissions and prepare for climate impacts. A delegation of approximately 20 faculty, staff, and students from MIT was on hand to observe the negotiations, share and conduct research, and launch new initiatives.

      On Saturday, Nov. 13, following two weeks of negotiations in the cavernous Scottish Events Campus, countries’ representatives agreed to the Glasgow Climate Pact. The pact reaffirms the goal of the 2015 Paris Agreement “to pursue efforts” to limit the global average temperature increase to 1.5 degrees Celsius above preindustrial levels, and recognizes that achieving this goal requires “reducing global carbon dioxide emissions by 45 percent by 2030 relative to the 2010 level and to net zero around mid-century.”

      “On issues like the need to reach net-zero emissions, reduce methane pollution, move beyond coal power, and tighten carbon accounting rules, the Glasgow pact represents some meaningful progress, but we still have so much work to do,” says Maria Zuber, MIT’s vice president for research, who led the Institute’s delegation to COP26. “Glasgow showed, once again, what a wicked complex problem climate change is, technically, economically, and politically. But it also underscored the determination of a global community of people committed to addressing it.”

      An “ambition gap”

      Both within the conference venue and at protests that spilled through the streets of Glasgow, one rallying cry was “keep 1.5 alive.” Alok Sharma, who was appointed by the UK government to preside over COP26, said in announcing the Glasgow pact: “We can now say with credibility that we have kept 1.5 degrees alive. But, its pulse is weak and it will only survive if we keep our promises and translate commitments into rapid action.”

      In remarks delivered during the first week of the conference, Sergey Paltsev, deputy director of MIT’s Joint Program on the Science and Policy of Global Change, presented findings from the latest MIT Global Change Outlook, which showed a wide gap between countries’ nationally determined contributions (NDCs) — the UN’s term for greenhouse gas emissions reduction pledges — and the reductions needed to put the world on track to meet the goals of the Paris Agreement and, now, the Glasgow pact.

      Pointing to this ambition gap, Paltsev called on all countries to do more, faster, to cut emissions. “We could dramatically reduce overall climate risk through more ambitious policy measures and investments,” says Paltsev. “We need to employ an integrated approach of moving to zero emissions in energy and industry, together with sustainable development and nature-based solutions, simultaneously improving human well-being and providing biodiversity benefits.”

      Finalizing the Paris rulebook

      A key outcome of COP26 (COP stands for “conference of the parties” to the UN Framework Convention on Climate Change, held for the 26th time) was the development of a set of rules to implement Article 6 of the Paris Agreement, which provides a mechanism for countries to receive credit for emissions reductions that they finance outside their borders, and to cooperate by buying and selling emissions reductions on international carbon markets.

      An agreement on this part of the Paris “rulebook” had eluded negotiators in the years since the Paris climate conference, in part because negotiators were concerned about how to prevent double-counting, wherein both buyers and sellers would claim credit for the emissions reductions.

      Michael Mehling, the deputy director of MIT’s Center for Energy and Environmental Policy Research (CEEPR) and an expert on international carbon markets, drew on a recent CEEPR working paper to describe critical negotiation issues under Article 6 during an event at the conference on Nov. 10 with climate negotiators and private sector representatives.

      He cited research that finds that Article 6, by leveraging the cost-efficiency of global carbon markets, could cut in half the cost that countries would incur to achieve their nationally determined contributions. “Which, seen from another angle, means you could double the ambition of these NDCs at no additional cost,” Mehling noted in his talk, adding that, given the persistent ambition gap, “any such opportunity is bitterly needed.”

      Andreas Haupt, a graduate student in the Institute for Data, Systems, and Society, joined MIT’s COP26 delegation to follow Article 6 negotiations. Haupt described the final days of negotiations over Article 6 as a “roller coaster.” Once negotiators reached an agreement, he says, “I felt relieved, but also unsure how strong of an effect the new rules, with all their weaknesses, will have. I am curious and hopeful regarding what will happen in the next year until the next large-scale negotiations in 2022.”

      Nature-based climate solutions

      World leaders also announced new agreements on the sidelines of the formal UN negotiations. One such agreement, a declaration on forests signed by more than 100 countries, commits to “working collectively to halt and reverse forest loss and land degradation by 2030.”

      A team from MIT’s Environmental Solutions Initiative (ESI), which has been working with policymakers and other stakeholders on strategies to protect tropical forests and advance other nature-based climate solutions in Latin America, was at COP26 to discuss their work and make plans for expanding it.

      Marcela Angel, a research associate at ESI, moderated a panel discussion featuring John Fernández, professor of architecture and ESI’s director, focused on protecting and enhancing natural carbon sinks, particularly tropical forests such as the Amazon that are at risk of deforestation, forest degradation, and biodiversity loss.

      “Deforestation and associated land use change remain one of the main sources of greenhouse gas emissions in most Amazonian countries, such as Brazil, Peru, and Colombia,” says Angel. “Our aim is to support these countries, whose nationally determined contributions depend on the effectiveness of policies to prevent deforestation and promote conservation, with an approach based on the integration of targeted technology breakthroughs, deep community engagement, and innovative bioeconomic opportunities for local communities that depend on forests for their livelihoods.”

      Energy access and renewable energy

      Worldwide, an estimated 800 million people lack access to electricity, and billions more have only limited or erratic electrical service. Providing universal access to energy is one of the UN’s sustainable development goals, creating a dual challenge: how to boost energy access without driving up greenhouse gas emissions.

      Rob Stoner, deputy director for science and technology of the MIT Energy Initiative (MITEI), and Ignacio Pérez-Arriaga, a visiting professor at the Sloan School of Management, attended COP26 to share their work as members of the Global Commission to End Energy Poverty, a collaboration between MITEI and the Rockefeller Foundation. It brings together global energy leaders from industry, the development finance community, academia, and civil society to identify ways to overcome barriers to investment in the energy sectors of countries with low energy access.

      The commission’s work helped to motivate the formation, announced at COP26 on Nov. 2, of the Global Energy Alliance for People and Planet, a multibillion-dollar commitment by the Rockefeller and IKEA foundations and Bezos Earth Fund to support access to renewable energy around the world.

      Another MITEI member of the COP26 delegation, Martha Broad, the initiative’s executive director, spoke about MIT research to inform the U.S. goal of scaling offshore wind energy capacity from approximately 30 megawatts today to 30 gigawatts by 2030, including significant new capacity off the coast of New England.

      Broad described research, funded by MITEI member companies, on a coating that can be applied to the blades of wind turbines to prevent icing that would require the turbines’ shutdown; the use of machine learning to inform preventative turbine maintenance; and methodologies for incorporating the effects of climate change into projections of future wind conditions to guide wind farm siting decisions today. She also spoke broadly about the need for public and private support to scale promising innovations.

      “Clearly, both the public sector and the private sector have a role to play in getting these technologies to the point where we can use them in New England, and also where we can deploy them affordably for the developing world,” Broad said at an event sponsored by America Is All In, a coalition of nonprofit and business organizations.

      Food and climate alliance

      Food systems around the world are increasingly at risk from the impacts of climate change. At the same time, these systems, which include all activities from food production to consumption and food waste, are responsible for about one-third of the human-caused greenhouse gas emissions warming the planet.

      At COP26, MIT’s Abdul Latif Jameel Water and Food Systems Lab announced the launch of a new alliance to drive research-based innovation that will make food systems more resilient and sustainable, called the Food and Climate Systems Transformation (FACT) Alliance. With 16 member institutions, the FACT Alliance will better connect researchers to farmers, food businesses, policymakers, and other food systems stakeholders around the world.

      Looking ahead

      By the end of 2022, the Glasgow pact asks countries to revisit their nationally determined contributions and strengthen them to bring them in line with the temperature goals of the Paris Agreement. The pact also “notes with deep regret” the failure of wealthier countries to collectively provide poorer countries $100 billion per year in climate financing that they pledged in 2009 to begin in 2020.

      These and other issues will be on the agenda for COP27, to be held in Sharm El-Sheikh, Egypt, next year.

      “Limiting warming to 1.5 degrees is broadly accepted as a critical goal to avoiding worsening climate consequences, but it’s clear that current national commitments will not get us there,” says ESI’s Fernández. “We will need stronger emissions reductions pledges, especially from the largest greenhouse gas emitters. At the same time, expanding creativity, innovation, and determination from every sector of society, including research universities, to get on with real-world solutions is essential. At Glasgow, MIT was front and center in energy systems, cities, nature-based solutions, and more. The year 2030 is right around the corner so we can’t afford to let up for one minute.” More

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      MIT collaborates with Biogen on three-year, $7 million initiative to address climate, health, and equity

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      MIT and Biogen have announced that they will collaborate with the goal to accelerate the science and action on climate change to improve human health. This collaboration is supported by a three-year, $7 million commitment from the company and the Biogen Foundation. The biotechnology company, headquartered in Cambridge, Massachusetts’ Kendall Square, discovers and develops therapies for people living with serious neurological diseases.

      “We have long believed it is imperative for Biogen to make the fight against climate change central to our long-term corporate responsibility commitments. Through this collaboration with MIT, we aim to identify and share innovative climate solutions that will deliver co-benefits for both health and equity,” says Michel Vounatsos, CEO of Biogen. “We are also proud to support the MIT Museum, which promises to make world-class science and education accessible to all, and honor Biogen co-founder Phillip A. Sharp with a dedication inside the museum that recognizes his contributions to its development.”

      Biogen and the Biogen Foundation are supporting research and programs across a range of areas at MIT.

      Advancing climate, health, and equity

      The first such effort involves new work within the MIT Joint Program on the Science and Policy of Global Change to establish a state-of-the-art integrated model of climate and health aimed at identifying targets that deliver climate and health co-benefits.

      “Evidence suggests that not all climate-related actions deliver equal health benefits, yet policymakers, planners, and stakeholders traditionally lack the tools to consider how decisions in one arena impact the other,” says C. Adam Schlosser, deputy director of the MIT Joint Program. “Biogen’s collaboration with the MIT Joint Program — and its support of a new distinguished Biogen Fellow who will develop the new climate/health model — will accelerate our efforts to provide decision-makers with these tools.”

      Biogen is also supporting the MIT Technology and Policy Program’s Research to Policy Engagement Initiative to infuse human health as a key new consideration in decision-making on the best pathways forward to address the global climate crisis, and bridge the knowledge-to-action gap by connecting policymakers, researchers, and diverse stakeholders. As part of this work, Biogen is underwriting a distinguished Biogen Fellow to advance new research on climate, health, and equity.

      “Our work with Biogen has allowed us to make progress on key questions that matter to human health and well-being under climate change,” says Noelle Eckley Selin, who directs the MIT Technology and Policy Program and is a professor in the MIT Institute for Data, Systems, and Society and the Department of Earth, Atmospheric and Planetary Sciences. “Further, their support of the Research to Policy Engagement Initiative helps all of our research become more effective in making change.”

      In addition, Biogen has joined 13 other companies in the MIT Climate and Sustainability Consortium (MCSC), which is supporting faculty and student research and developing impact pathways that present a range of actionable steps that companies can take — within and across industries — to advance progress toward climate targets.

      “Biogen joining the MIT Climate and Sustainability Consortium represents our commitment to working with member companies across a diverse range of industries, an approach that aims to drive changes swift and broad enough to match the scale of the climate challenge,” says Jeremy Gregory, executive director of the MCSC. “We are excited to welcome a member from the biotechnology space and look forward to harnessing Biogen’s perspectives as we continue to collaborate and work together with the MIT community in exciting and meaningful ways.”

      Making world-class science and education available to MIT Museum visitors

      Support from Biogen will honor Nobel laureate, MIT Institute professor, and Biogen co-founder Phillip A. Sharp with a named space inside the new Kendall Square location of the MIT Museum, set to open in spring 2022. Biogen also is supporting one of the museum’s opening exhibitions, “Essential MIT,” with a section focused on solving real-world problems such as climate change. It is also providing programmatic support for the museum’s Life Sciences Maker Engagement Program.

      “Phil has provided fantastic support to the MIT Museum for more than a decade as an advisory board member and now as board chair, and he has been deeply involved in plans for the new museum at Kendall Square,” says John Durant, the Mark R. Epstein (Class of 1963) Director of the museum. “Seeing his name on the wall will be a constant reminder of his key role in this development, as well as a mark of our gratitude.”

      Inspiring and empowering the next generation of scientists

      Biogen funding is also being directed to engage the next generation of scientists through support for the Biogen-MIT Biotech in Action: Virtual Lab, a program designed to foster a love of science among diverse and under-served student populations.

      Biogen’s support is part of its Healthy Climate, Healthy Lives initiative, a $250 million, 20-year commitment to eliminate fossil fuels across its operations and collaborate with renowned institutions to advance the science of climate and health and support under-served communities. Additional support is provided by the Biogen Foundation to further its long-standing focus on providing students with equitable access to outstanding science education. More

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      Avoiding shortcut solutions in artificial intelligence

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      If your Uber driver takes a shortcut, you might get to your destination faster. But if a machine learning model takes a shortcut, it might fail in unexpected ways.

      In machine learning, a shortcut solution occurs when the model relies on a simple characteristic of a dataset to make a decision, rather than learning the true essence of the data, which can lead to inaccurate predictions. For example, a model might learn to identify images of cows by focusing on the green grass that appears in the photos, rather than the more complex shapes and patterns of the cows.  

      A new study by researchers at MIT explores the problem of shortcuts in a popular machine-learning method and proposes a solution that can prevent shortcuts by forcing the model to use more data in its decision-making.

      By removing the simpler characteristics the model is focusing on, the researchers force it to focus on more complex features of the data that it hadn’t been considering. Then, by asking the model to solve the same task two ways — once using those simpler features, and then also using the complex features it has now learned to identify — they reduce the tendency for shortcut solutions and boost the performance of the model.

      One potential application of this work is to enhance the effectiveness of machine learning models that are used to identify disease in medical images. Shortcut solutions in this context could lead to false diagnoses and have dangerous implications for patients.

      “It is still difficult to tell why deep networks make the decisions that they do, and in particular, which parts of the data these networks choose to focus upon when making a decision. If we can understand how shortcuts work in further detail, we can go even farther to answer some of the fundamental but very practical questions that are really important to people who are trying to deploy these networks,” says Joshua Robinson, a PhD student in the Computer Science and Artificial Intelligence Laboratory (CSAIL) and lead author of the paper.

      Robinson wrote the paper with his advisors, senior author Suvrit Sra, the Esther and Harold E. Edgerton Career Development Associate Professor in the Department of Electrical Engineering and Computer Science (EECS) and a core member of the Institute for Data, Systems, and Society (IDSS) and the Laboratory for Information and Decision Systems; and Stefanie Jegelka, the X-Consortium Career Development Associate Professor in EECS and a member of CSAIL and IDSS; as well as University of Pittsburgh assistant professor Kayhan Batmanghelich and PhD students Li Sun and Ke Yu. The research will be presented at the Conference on Neural Information Processing Systems in December. 

      The long road to understanding shortcuts

      The researchers focused their study on contrastive learning, which is a powerful form of self-supervised machine learning. In self-supervised machine learning, a model is trained using raw data that do not have label descriptions from humans. It can therefore be used successfully for a larger variety of data.

      A self-supervised learning model learns useful representations of data, which are used as inputs for different tasks, like image classification. But if the model takes shortcuts and fails to capture important information, these tasks won’t be able to use that information either.

      For example, if a self-supervised learning model is trained to classify pneumonia in X-rays from a number of hospitals, but it learns to make predictions based on a tag that identifies the hospital the scan came from (because some hospitals have more pneumonia cases than others), the model won’t perform well when it is given data from a new hospital.     

      For contrastive learning models, an encoder algorithm is trained to discriminate between pairs of similar inputs and pairs of dissimilar inputs. This process encodes rich and complex data, like images, in a way that the contrastive learning model can interpret.

      The researchers tested contrastive learning encoders with a series of images and found that, during this training procedure, they also fall prey to shortcut solutions. The encoders tend to focus on the simplest features of an image to decide which pairs of inputs are similar and which are dissimilar. Ideally, the encoder should focus on all the useful characteristics of the data when making a decision, Jegelka says.

      So, the team made it harder to tell the difference between the similar and dissimilar pairs, and found that this changes which features the encoder will look at to make a decision.

      “If you make the task of discriminating between similar and dissimilar items harder and harder, then your system is forced to learn more meaningful information in the data, because without learning that it cannot solve the task,” she says.

      But increasing this difficulty resulted in a tradeoff — the encoder got better at focusing on some features of the data but became worse at focusing on others. It almost seemed to forget the simpler features, Robinson says.

      To avoid this tradeoff, the researchers asked the encoder to discriminate between the pairs the same way it had originally, using the simpler features, and also after the researchers removed the information it had already learned. Solving the task both ways simultaneously caused the encoder to improve across all features.

      Their method, called implicit feature modification, adaptively modifies samples to remove the simpler features the encoder is using to discriminate between the pairs. The technique does not rely on human input, which is important because real-world data sets can have hundreds of different features that could combine in complex ways, Sra explains.

      From cars to COPD

      The researchers ran one test of this method using images of vehicles. They used implicit feature modification to adjust the color, orientation, and vehicle type to make it harder for the encoder to discriminate between similar and dissimilar pairs of images. The encoder improved its accuracy across all three features — texture, shape, and color — simultaneously.

      To see if the method would stand up to more complex data, the researchers also tested it with samples from a medical image database of chronic obstructive pulmonary disease (COPD). Again, the method led to simultaneous improvements across all features they evaluated.

      While this work takes some important steps forward in understanding the causes of shortcut solutions and working to solve them, the researchers say that continuing to refine these methods and applying them to other types of self-supervised learning will be key to future advancements.

      “This ties into some of the biggest questions about deep learning systems, like ‘Why do they fail?’ and ‘Can we know in advance the situations where your model will fail?’ There is still a lot farther to go if you want to understand shortcut learning in its full generality,” Robinson says.

      This research is supported by the National Science Foundation, National Institutes of Health, and the Pennsylvania Department of Health’s SAP SE Commonwealth Universal Research Enhancement (CURE) program. More

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      Study: Global cancer risk from burning organic matter comes from unregulated chemicals

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      Whenever organic matter is burned, such as in a wildfire, a power plant, a car’s exhaust, or in daily cooking, the combustion releases polycyclic aromatic hydrocarbons (PAHs) — a class of pollutants that is known to cause lung cancer.

      There are more than 100 known types of PAH compounds emitted daily into the atmosphere. Regulators, however, have historically relied on measurements of a single compound, benzo(a)pyrene, to gauge a community’s risk of developing cancer from PAH exposure. Now MIT scientists have found that benzo(a)pyrene may be a poor indicator of this type of cancer risk.

      In a modeling study appearing today in the journal GeoHealth, the team reports that benzo(a)pyrene plays a small part — about 11 percent — in the global risk of developing PAH-associated cancer. Instead, 89 percent of that cancer risk comes from other PAH compounds, many of which are not directly regulated.

      Interestingly, about 17 percent of PAH-associated cancer risk comes from “degradation products” — chemicals that are formed when emitted PAHs react in the atmosphere. Many of these degradation products can in fact be more toxic than the emitted PAH from which they formed.

      The team hopes the results will encourage scientists and regulators to look beyond benzo(a)pyrene, to consider a broader class of PAHs when assessing a community’s cancer risk.

      “Most of the regulatory science and standards for PAHs are based on benzo(a)pyrene levels. But that is a big blind spot that could lead you down a very wrong path in terms of assessing whether cancer risk is improving or not, and whether it’s relatively worse in one place than another,” says study author Noelle Selin, a professor in MIT’s Institute for Data, Systems and Society, and the Department of Earth, Atmospheric and Planetary Sciences.

      Selin’s MIT co-authors include Jesse Kroll, Amy Hrdina, Ishwar Kohale, Forest White, and Bevin Engelward, and Jamie Kelly (who is now at University College London). Peter Ivatt and Mathew Evans at the University of York are also co-authors.

      Chemical pixels

      Benzo(a)pyrene has historically been the poster chemical for PAH exposure. The compound’s indicator status is largely based on early toxicology studies. But recent research suggests the chemical may not be the PAH representative that regulators have long relied upon.   

      “There has been a bit of evidence suggesting benzo(a)pyrene may not be very important, but this was from just a few field studies,” says Kelly, a former postdoc in Selin’s group and the study’s lead author.

      Kelly and his colleagues instead took a systematic approach to evaluate benzo(a)pyrene’s suitability as a PAH indicator. The team began by using GEOS-Chem, a global, three-dimensional chemical transport model that breaks the world into individual grid boxes and simulates within each box the reactions and concentrations of chemicals in the atmosphere.

      They extended this model to include chemical descriptions of how various PAH compounds, including benzo(a)pyrene, would react in the atmosphere. The team then plugged in recent data from emissions inventories and meteorological observations, and ran the model forward to simulate the concentrations of various PAH chemicals around the world over time.

      Risky reactions

      In their simulations, the researchers started with 16 relatively well-studied PAH chemicals, including benzo(a)pyrene, and traced the concentrations of these chemicals, plus the concentration of their degradation products over two generations, or chemical transformations. In total, the team evaluated 48 PAH species.

      They then compared these concentrations with actual concentrations of the same chemicals, recorded by monitoring stations around the world. This comparison was close enough to show that the model’s concentration predictions were realistic.

      Then within each model’s grid box, the researchers related the concentration of each PAH chemical to its associated cancer risk; to do this, they had to develop a new method based on previous studies in the literature to avoid double-counting risk from the different chemicals. Finally, they overlaid population density maps to predict the number of cancer cases globally, based on the concentration and toxicity of a specific PAH chemical in each location.

      Dividing the cancer cases by population produced the cancer risk associated with that chemical. In this way, the team calculated the cancer risk for each of the 48 compounds, then determined each chemical’s individual contribution to the total risk.

      This analysis revealed that benzo(a)pyrene had a surprisingly small contribution, of about 11 percent, to the overall risk of developing cancer from PAH exposure globally. Eighty-nine percent of cancer risk came from other chemicals. And 17 percent of this risk arose from degradation products.

      “We see places where you can find concentrations of benzo(a)pyrene are lower, but the risk is higher because of these degradation products,” Selin says. “These products can be orders of magnitude more toxic, so the fact that they’re at tiny concentrations doesn’t mean you can write them off.”

      When the researchers compared calculated PAH-associated cancer risks around the world, they found significant differences depending on whether that risk calculation was based solely on concentrations of benzo(a)pyrene or on a region’s broader mix of PAH compounds.

      “If you use the old method, you would find the lifetime cancer risk is 3.5 times higher in Hong Kong versus southern India, but taking into account the differences in PAH mixtures, you get a difference of 12 times,” Kelly says. “So, there’s a big difference in the relative cancer risk between the two places. And we think it’s important to expand the group of compounds that regulators are thinking about, beyond just a single chemical.”

      The team’s study “provides an excellent contribution to better understanding these ubiquitous pollutants,” says Elisabeth Galarneau, an air quality expert and PhD research scientist in Canada’s Department of the Environment. “It will be interesting to see how these results compare to work being done elsewhere … to pin down which (compounds) need to be tracked and considered for the protection of human and environmental health.”

      This research was conducted in MIT’s Superfund Research Center and is supported in part by the National Institute of Environmental Health Sciences Superfund Basic Research Program, and the National Institutes of Health. More

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      Research collaboration puts climate-resilient crops in sight

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      Any houseplant owner knows that changes in the amount of water or sunlight a plant receives can put it under immense stress. A dying plant brings certain disappointment to anyone with a green thumb. 

      But for farmers who make their living by successfully growing plants, and whose crops may nourish hundreds or thousands of people, the devastation of failing flora is that much greater. As climate change is poised to cause increasingly unpredictable weather patterns globally, crops may be subject to more extreme environmental conditions like droughts, fluctuating temperatures, floods, and wildfire. 

      Climate scientists and food systems researchers worry about the stress climate change may put on crops, and on global food security. In an ambitious interdisciplinary project funded by the Abdul Latif Jameel Water and Food Systems Lab (J-WAFS), David Des Marais, the Gale Assistant Professor in the Department of Civil and Environmental Engineering at MIT, and Caroline Uhler, an associate professor in the MIT Department of Electrical Engineering and Computer Science and the Institute for Data, Systems, and Society, are investigating how plant genes communicate with one another under stress. Their research results can be used to breed plants more resilient to climate change.

      Crops in trouble

      Governing plants’ responses to environmental stress are gene regulatory networks, or GRNs, which guide the development and behaviors of living things. A GRN may be comprised of thousands of genes and proteins that all communicate with one another. GRNs help a particular cell, tissue, or organism respond to environmental changes by signaling certain genes to turn their expression on or off.

      Even seemingly minor or short-term changes in weather patterns can have large effects on crop yield and food security. An environmental trigger, like a lack of water during a crucial phase of plant development, can turn a gene on or off, and is likely to affect many others in the GRN. For example, without water, a gene enabling photosynthesis may switch off. This can create a domino effect, where the genes that rely on those regulating photosynthesis are silenced, and the cycle continues. As a result, when photosynthesis is halted, the plant may experience other detrimental side effects, like no longer being able to reproduce or defend against pathogens. The chain reaction could even kill a plant before it has the chance to be revived by a big rain.

      Des Marais says he wishes there was a way to stop those genes from completely shutting off in such a situation. To do that, scientists would need to better understand how exactly gene networks respond to different environmental triggers. Bringing light to this molecular process is exactly what he aims to do in this collaborative research effort.

      Solving complex problems across disciplines

      Despite their crucial importance, GRNs are difficult to study because of how complex and interconnected they are. Usually, to understand how a particular gene is affecting others, biologists must silence one gene and see how the others in the network respond. 

      For years, scientists have aspired to an algorithm that could synthesize the massive amount of information contained in GRNs to “identify correct regulatory relationships among genes,” according to a 2019 article in the Encyclopedia of Bioinformatics and Computational Biology. 

      “A GRN can be seen as a large causal network, and understanding the effects that silencing one gene has on all other genes requires understanding the causal relationships among the genes,” says Uhler. “These are exactly the kinds of algorithms my group develops.”

      Des Marais and Uhler’s project aims to unravel these complex communication networks and discover how to breed crops that are more resilient to the increased droughts, flooding, and erratic weather patterns that climate change is already causing globally.

      In addition to climate change, by 2050, the world will demand 70 percent more food to feed a booming population. “Food systems challenges cannot be addressed individually in disciplinary or topic area silos,” says Greg Sixt, J-WAFS’ research manager for climate and food systems. “They must be addressed in a systems context that reflects the interconnected nature of the food system.”

      Des Marais’ background is in biology, and Uhler’s in statistics. “Dave’s project with Caroline was essentially experimental,” says Renee J. Robins, J-WAFS’ executive director. “This kind of exploratory research is exactly what the J-WAFS seed grant program is for.”

      Getting inside gene regulatory networks

      Des Marais and Uhler’s work begins in a windowless basement on MIT’s campus, where 300 genetically identical Brachypodium distachyon plants grow in large, temperature-controlled chambers. The plant, which contains more than 30,000 genes, is a good model for studying important cereal crops like wheat, barley, maize, and millet. For three weeks, all plants receive the same temperature, humidity, light, and water. Then, half are slowly tapered off water, simulating drought-like conditions.

      Six days into the forced drought, the plants are clearly suffering. Des Marais’ PhD student Jie Yun takes tissues from 50 hydrated and 50 dry plants, freezes them in liquid nitrogen to immediately halt metabolic activity, grinds them up into a fine powder, and chemically separates the genetic material. The genes from all 100 samples are then sequenced at a lab across the street.

      The team is left with a spreadsheet listing the 30,000 genes found in each of the 100 plants at the moment they were frozen, and how many copies there were. Uhler’s PhD student Anastasiya Belyaeva inputs the massive spreadsheet into the computer program she developed and runs her novel algorithm. Within a few hours, the group can see which genes were most active in one condition over another, how the genes were communicating, and which were causing changes in others. 

      The methodology captures important subtleties that could allow researchers to eventually alter gene pathways and breed more resilient crops. “When you expose a plant to drought stress, it’s not like there’s some canonical response,” Des Marais says. “There’s lots of things going on. It’s turning this physiologic process up, this one down, this one didn’t exist before, and now suddenly is turned on.” 

      In addition to Des Marais and Uhler’s research, J-WAFS has funded projects in food and water from researchers in 29 departments across all five MIT schools as well as the MIT Schwarzman College of Computing. J-WAFS seed grants typically fund seven to eight new projects every year.

      “The grants are really aimed at catalyzing new ideas, providing the sort of support [for MIT researchers] to be pushing boundaries, and also bringing in faculty who may have some interesting ideas that they haven’t yet applied to water or food concerns,” Robins says. “It’s an avenue for researchers all over the Institute to apply their ideas to water and food.”

      Alison Gold is a student in MIT’s Graduate Program in Science Writing. More

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      MIT appoints members of new faculty committee to drive climate action plan

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      In May, responding to the world’s accelerating climate crisis, MIT issued an ambitious new plan, “Fast Forward: MIT’s Climate Action Plan for the Decade.” The plan outlines a broad array of new and expanded initiatives across campus to build on the Institute’s longstanding climate work.

      Now, to unite these varied climate efforts, maximize their impact, and identify new ways for MIT to contribute climate solutions, the Institute has appointed more than a dozen faculty members to a new committee established by the Fast Forward plan, named the Climate Nucleus.

      The committee includes leaders of a number of climate- and energy-focused departments, labs, and centers that have significant responsibilities under the plan. Its membership spans all five schools and the MIT Schwarzman College of Computing. Professors Noelle Selin and Anne White have agreed to co-chair the Climate Nucleus for a term of three years.

      “I am thrilled and grateful that Noelle and Anne have agreed to step up to this important task,” says Maria T. Zuber, MIT’s vice president for research. “Under their leadership, I’m confident that the Climate Nucleus will bring new ideas and new energy to making the strategy laid out in the climate action plan a reality.”

      The Climate Nucleus has broad responsibility for the management and implementation of the Fast Forward plan across its five areas of action: sparking innovation, educating future generations, informing and leveraging government action, reducing MIT’s own climate impact, and uniting and coordinating all of MIT’s climate efforts.

      Over the next few years, the nucleus will aim to advance MIT’s contribution to a two-track approach to decarbonizing the global economy, an approach described in the Fast Forward plan. First, humanity must go as far and as fast as it can to reduce greenhouse gas emissions using existing tools and methods. Second, societies need to invest in, invent, and deploy new tools — and promote new institutions and policies — to get the global economy to net-zero emissions by mid-century.

      The co-chairs of the nucleus bring significant climate and energy expertise, along with deep knowledge of the MIT community, to their task.

      Selin is a professor with joint appointments in the Institute for Data, Systems, and Society and the Department of Earth, Atmospheric and Planetary Sciences. She is also the director of the Technology and Policy Program. She began at MIT in 2007 as a postdoc with the Center for Global Change Science and the Joint Program on the Science and Policy of Global Change. Her research uses modeling to inform decision-making on air pollution, climate change, and hazardous substances.

      “Climate change affects everything we do at MIT. For the new climate action plan to be effective, the Climate Nucleus will need to engage the entire MIT community and beyond, including policymakers as well as people and communities most affected by climate change,” says Selin. “I look forward to helping to guide this effort.”

      White is the School of Engineering’s Distinguished Professor of Engineering and the head of the Department of Nuclear Science and Engineering. She joined the MIT faculty in 2009 and has also served as the associate director of MIT’s Plasma Science and Fusion Center. Her research focuses on assessing and refining the mathematical models used in the design of fusion energy devices, such as tokamaks, which hold promise for delivering limitless zero-carbon energy.

      “The latest IPCC report underscores the fact that we have no time to lose in decarbonizing the global economy quickly. This is a problem that demands we use every tool in our toolbox — and develop new ones — and we’re committed to doing that,” says White, referring to an August 2021 report from the Intergovernmental Panel on Climate Change, a UN climate science body, that found that climate change has already affected every region on Earth and is intensifying. “We must train future technical and policy leaders, expand opportunities for students to work on climate problems, and weave sustainability into every one of MIT’s activities. I am honored to be a part of helping foster this Institute-wide collaboration.”

      A first order of business for the Climate Nucleus will be standing up three working groups to address specific aspects of climate action at MIT: climate education, climate policy, and MIT’s own carbon footprint. The working groups will be responsible for making progress on their particular areas of focus under the plan and will make recommendations to the nucleus on ways of increasing MIT’s effectiveness and impact. The working groups will also include student, staff, and alumni members, so that the entire MIT community has the opportunity to contribute to the plan’s implementation.  

      The nucleus, in turn, will report and make regular recommendations to the Climate Steering Committee, a senior-level team consisting of Zuber; Richard Lester, the associate provost for international activities; Glen Shor, the executive vice president and treasurer; and the deans of the five schools and the MIT Schwarzman College of Computing. The new plan created the Climate Steering Committee to ensure that climate efforts will receive both the high-level attention and the resources needed to succeed.

      Together the new committees and working groups are meant to form a robust new infrastructure for uniting and coordinating MIT’s climate action efforts in order to maximize their impact. They replace the Climate Action Advisory Committee, which was created in 2016 following the release of MIT’s first climate action plan.

      In addition to Selin and White, the members of the Climate Nucleus are:

      Bob Armstrong, professor in the Department of Chemical Engineering and director of the MIT Energy Initiative;
      Dara Entekhabi, professor in the departments of Civil and Environmental Engineering and Earth, Atmospheric and Planetary Sciences;
      John Fernández, professor in the Department of Architecture and director of the Environmental Solutions Initiative;
      Stefan Helmreich, professor in the Department of Anthropology;
      Christopher Knittel, professor in the MIT Sloan School of Management and director of the Center for Energy and Environmental Policy Research;
      John Lienhard, professor in the Department of Mechanical Engineering and director of the Abdul Latif Jameel Water and Food Systems Lab;
      Julie Newman, director of the Office of Sustainability and lecturer in the Department of Urban Studies and Planning;
      Elsa Olivetti, professor in the Department of Materials Science and Engineering and co-director of the Climate and Sustainability Consortium;
      Christoph Reinhart, professor in the Department of Architecture and director of the Building Technology Program;
      John Sterman, professor in the MIT Sloan School of Management and director of the Sloan Sustainability Initiative;
      Rob van der Hilst, professor and head of the Department of Earth, Atmospheric and Planetary Sciences; and
      Chris Zegras, professor and head of the Department of Urban Studies and Planning. More

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      MIT welcomes nine MLK Visiting Professors and Scholars for 2021-22

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      In its 31st year, the Martin Luther King Jr. (MLK) Visiting Professors and Scholars Program will host nine outstanding scholars from across the Americas. The flagship program honors the life and legacy of Martin Luther King Jr. by increasing the presence and recognizing the contributions of underrepresented minority scholars at MIT. Throughout the year, the cohort will enhance their scholarship through intellectual engagement with the MIT community and enrich the cultural, academic, and professional experience of students.

      The 2021-22 scholars

      Sanford Biggers is an interdisciplinary artist hosted by the Department of Architecture. His work is an interplay of narrative, perspective, and history that speaks to current social, political, and economic happenings while examining their contexts. His diverse practice positions him as a collaborator with the past through explorations of often-overlooked cultural and political narratives from American history. Through collaboration with his faculty host, Brandon Clifford, he will spend the year contributing to projects with Architecture; Art, Culture and Technology; the Transmedia Storytelling initiatives; and community workshops and engagement with local K-12 education.

      Kristen Dorsey is an assistant professor of engineering at Smith College. She will be hosted by the Program in Media Arts and Sciences at the MIT Media Lab. Her research focuses on the fabrication and characterization of microscale sensors and microelectromechanical systems. Dorsey tries to understand “why things go wrong” by investigating device reliability and stability. At MIT, Dorsey is interested in forging collaborations to consider issues of access and equity as they apply to wearable health care devices.

      Omolola “Lola” Eniola-Adefeso is the associate dean for graduate and professional education and associate professor of chemical engineering at the University of Michigan. She will join MIT’s Department of Chemical Engineering (ChemE). Eniola-Adefeso will work with Professor Paula Hammond on developing electrostatically assembled nanoparticle coatings that enable targeting of specific immune cell types. A co-founder and chief scientific officer of Asalyxa Bio, she is interested in the interactions between blood leukocytes and endothelial cells in vessel lumen lining, and how they change during inflammation response. Eniola-Adefeso will also work with the Diversity in Chemical Engineering (DICE) graduate student group in ChemE and the National Organization of Black Chemists and Chemical Engineers.

      Robert Gilliard Jr. is an assistant professor of chemistry at the University of Virginia and will join the MIT chemistry department, working closely with faculty host Christopher Cummins. His research focuses on various aspects of group 15 element chemistry. He was a founding member of the National Organization of Black Chemists and Chemical Engineers UGA section, and he has served as an American Chemical Society (ACS) Bridge Program mentor as well as an ACS Project Seed mentor. Gilliard has also collaborated with the Cleveland Public Library to expose diverse young scholars to STEM fields.

      Valencia Joyner Koomson ’98, MNG ’99 will return for the second semester of her appointment this fall in MIT’s Department of Electrical Engineering and Computer Science. Based at Tufts University, where she is an associate professor in the Department of Electrical and Computer Engineering, Koomson has focused her research on microelectronic systems for cell analysis and biomedical applications. In the past semester, she has served as a judge for the Black Alumni/ae of MIT Research Slam and worked closely with faculty host Professor Akintunde Akinwande.

      Luis Gilberto Murillo-Urrutia will continue his appointment in MIT’s Environmental Solutions Initiative. He has 30 years of experience in public policy design, implementation, and advocacy, most notably in the areas of sustainable regional development, environmental protection and management of natural resources, social inclusion, and peace building. At MIT, he has continued his research on environmental justice, with a focus on carbon policy and its impacts on Afro-descendant communities in Colombia.

      Sonya T. Smith was the first female professor of mechanical engineering at Howard University. She will join the Department of Aeronautics and Astronautics at MIT. Her research involves computational fluid dynamics and thermal management of electronics for air and space vehicles. She is looking forward to serving as a mentor to underrepresented students across MIT and fostering new research collaborations with her home lab at Howard.

      Lawrence Udeigwe is an associate professor of mathematics at Manhattan College and will join MIT’s Department of Brain and Cognitive Sciences. He plans to co-teach a graduate seminar course with Professor James DiCarlo to explore practical and philosophical questions regarding the use of simulations to build theories in neuroscience. Udeigwe also leads the Lorens Chuno group; as a singer-songwriter, his work tackles intersectionality issues faced by contemporary Africans.

      S. Craig Watkins is an internationally recognized expert in media and a professor at the University of Texas at Austin. He will join MIT’s Institute for Data, Systems, and Society to assist in researching the role of big data in enabling deep structural changes with regard to systemic racism. He will continue to expand on his work as founding director of the Institute for Media Innovation at the University of Texas at Austin, exploring the intersections of critical AI studies, critical race studies, and design. He will also work with MIT’s Center for Advanced Virtuality to develop computational systems that support social perspective-taking.

      Community engagement

      Throughout the 2021-22 academic year, MLK professors and scholars will be presenting their research at a monthly speaker series. Events will be held in an in-person/Zoom hybrid environment. All members of the MIT community are encouraged to attend and hear directly from this year’s cohort of outstanding scholars. To hear more about upcoming events, subscribe to their mailing list.

      On Sept. 15, all are invited to join the Institute Community and Equity Office in welcoming the scholars to campus by attending a welcome luncheon. More

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      3 Questions: Peko Hosoi on the data-driven reasoning behind MIT’s Covid-19 policies for the fall

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      As students, faculty, and staff prepare for a full return to the MIT campus in the weeks ahead, procedures for entering buildings, navigating classrooms and labs, and interacting with friends and colleagues will likely take some getting used to.

      The Institute recently reinforced its policies for indoor masking and has also continued to require regular testing for people who live, work, or study on campus — procedures that apply to both vaccinated and unvaccinated individuals. Vaccination is required for all students, faculty, and staff on campus unless a medical or religious exemption is granted.

      These and other policies adopted by MIT to control the spread of Covid-19 have been informed by modeling efforts from a volunteer group of MIT faculty, students, and postdocs. The collaboration, dubbed Isolat, was co-founded by Anette “Peko” Hosoi, the Neil and Jane Pappalardo Professor of Mechanical Engineering and associate dean in the School of Engineering.

      The group, which is organized through MIT’s Institute for Data, Systems, and Society (IDSS), has run numerous models to show how measures such as mask wearing, testing, ventilation, and quarantining could affect Covid-19’s spread. These models have helped to shape MIT’s Covid-19 policies throughout the pandemic, including its procedures for returning to campus this fall.

      Hosoi spoke with MIT News about the data-backed reasoning behind some of these procedures, including indoor masking and regular testing, and how a “generous community” will help MIT safely weather the virus and its variants.

      Q: Take us through how you have been modeling Covid-19 and its variants, in regard to helping MIT shape its Covid policies. What’s the approach you’ve taken, and why?

      A: The approach we’re taking uses a simple counting exercise developed in IDSS to estimate the balance of testing, masking, and vaccination that is required to keep the virus in check. The underlying objective is to find infected people faster, on average, than they can infect others, which is captured in a simple algebraic expression. Our objective can be accomplished either by speeding up the rate of finding infected people (i.e. increasing testing frequency) or slowing down the rate of infection (i.e. increasing masking and vaccination) or by a combination of both. To give you a sense of the numbers, balances for different levels of testing are shown in the chart below for a vaccine efficacy of 67 percent and a contagious period of 18 days (which are the CDC’s latest parameters for the Delta variant).

      The vertical axis shows the now-famous reproduction number R0, i.e. the average number of people that one infected person will infect throughout the course of their illness. These R0 are averages for the population, and in specific circumstances the spreading could be more than that.

      Each blue line represents a different testing frequency: Below the line, the virus is controlled; above the line, it spreads. For example, the dotted blue line shows the boundary if we rely solely on vaccination with no testing. In that case, even if everyone is vaccinated, we can only control up to an R0 of about 3.  Unfortunately, the CDC places R0 of the Delta variant somewhere between 5 and 9, so vaccination alone is insufficient to control the spread. (As an aside, this also means that given the efficacy estimates for the current vaccines, herd immunity is not possible.)

      Next consider the dashed blue line, which represents the stability boundary if we test everyone once per week. If our vaccination rate is greater than about 90 percent, testing one time per week can control even the CDC’s most pessimistic estimate for the Delta variant’s R0.

      Q: In returning to campus over the next few weeks, indoor masking and regular testing are required of every MIT community member, even those who are vaccinated. What in your modeling has shown that each of these policies is necessary?

      A: Given that the chart above shows that vaccination and weekly testing are sufficient to control the virus, one should certainly ask “Why have we reinstated indoor masking?” The answer is related to the fact that, as a university, our population turns over once a year; every September we bring in a few thousand new people. Those people are coming from all over the world, and some of them may not have had the opportunity to get vaccinated yet. The good news is that MIT Medical has vaccines and will be administering them to any unvaccinated students as soon as they arrive; the bad news is that, as we all know, it takes three to five weeks for resistance to build up, depending on the vaccine. This means that we should think of August and September as a transition period during which the vaccination rates may fluctuate as new people arrive. 

      The other revelation that has informed our policies for September is the recent report from the CDC that infected vaccinated people carry roughly the same viral load as unvaccinated infected people. This suggests that vaccinated people — although they are highly unlikely to get seriously ill — are a consequential part of the transmission chain and can pass the virus along to others. So, in order to avoid giving the virus to people who are not yet fully vaccinated during the transition period, we all need to exercise a little extra care to give the newly vaccinated time for their immune systems to ramp up. 

      Q: As the fall progresses, what signs are you looking for that might shift decisions on masking and testing on campus?

      A: Eventually we will have to shift responsibility toward individuals rather than institutions, and allow people to make decisions about masks and testing based on their own risk tolerance. The success of the vaccines in suppressing severe illness will enable us to shift to a position in which our objective is not necessarily to control the spread of the virus, but rather to reduce the risk of serious outcomes to an acceptable level. There are many people who believe we need to make this adjustment and wean ourselves off pandemic living. They are right; we cannot continue like this forever. However, we have not played all our cards yet, and, in my opinion, we need to carefully consider what’s left in our hand before we abdicate institutional responsibility.

      The final ace we have to play is vaccinating kids. It is important to remember that we have many people in our community with kids who are too young to be vaccinated and, understandably, those parents do not want to bring Covid home to their children. Furthermore, our campus is not just a workplace; it is also home to thousands of people, some of whom have children living in our residences or attending an MIT childcare center. Given that context, and the high probability that a vaccine will be approved for children in the near future, it is my belief that our community has the empathy and fortitude to try to keep the virus in check until parents have the option to protect their children with vaccines. 

      Bearing in mind that children constitute an unprotected portion of our population, let me return to the original question and speculate on the fate of masks and testing in the fall. Regarding testing, the analysis suggests that we cannot give that up entirely if we would like to control the spread of the virus. Second, control of the virus is not the only benefit we get from testing. It also gives us situational awareness, serves as an early warning beacon, and provides information that individual members of the community can use as they make decisions about their own risk budget. Personally, I’ve been testing for a year now and I find it easy and reassuring. Honestly, it’s nice to know that I’m Covid-free before I see friends (outside!) or go home to my family.

      Regarding masks, there is always uncertainty around whether a new variant will arise or whether vaccine efficacy will fade, but, given the current parameters and our analysis, my hope is that we will be in a position to provide some relief on the mask mandate once the incoming members of our population have been fully vaccinated. I also suspect that whenever the mask mandate is lifted, masks are not likely to go away. There are certainly situations in which I will continue to wear a mask regardless of the mandate, and many in our community will continue to feel safer wearing masks even when they are not required.

      I believe that we are a generous community and that we will be willing to take precautions to help keep each other healthy. The students who were on campus last year did an outstanding job, and they have given me a tremendous amount of faith that we can be considerate and good to one another even in extremely trying times.

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